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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19532431_19537425_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19532431 - 19537425
Intron Length:
4995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
GAGGCATTTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTTTCTGGATTG
Flanking Amino Acid:
RGISAENSWQSTVSNFPSLF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
47.1
-0.1
1.7
51.1
46.9
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
44.9
-0.5
2.3
59.56
43.1

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048175
19512812 - 19548423
35612