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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19536749_19548321_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19536749 - 19548321
Intron Length:
11573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TTATATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCTTTATAT
Flanking Amino Acid:
EASQSLHSHTIVRRYSDFDL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
57.9
41.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
86
0.81
0.8
81
36
Minor 5ss
31.7
-2.1
3.3
41.6
45.3
Minor BPS
70.9
0.73
1.6
89.12
35.5

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713