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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19558679_19558723_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19558679 - 19558723
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAATGTTT
5'SS Class:
major
3'SS Sequence:
TCCAGGAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
GATCCAGGAAAT
Flanking Amino Acid:
NITHYEEQLVAQGTSMPS*
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.3
68.6
42.3
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
49.1
-0
1
44.9
40.3
Minor 5ss
32.6
-2
4.4
52.3
46.7
Minor BPS
40.6
-0.6
2.2
59.74
42.2

Associated Gene:

Gene:
PRKAR2A
Ensembl Gene ID:
ENSAPLG00000006277
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032387
19558652 - 19611555
52904