Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19558813_19559388_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19558813 - 19559388

Intron Length:

576

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTGATAAACA

Flanking Amino Acid:

AYAVGEVKCLVMDVQAFERL

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

85.5

0.8

80.4

31.5

Minor 5ss

38.7

-1.3

2.8

49.1

46.7

Minor BPS

0.09

2.3

76.36

40.9

Associated Gene:

Gene:

PRKAR2A

Ensembl Gene ID:

ENSAPLG00000006277

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032387

19558652 - 19611555

52904

ENSAPLT00000006536

19558679 - 19611555

52877