About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19559528_19560207_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19559528 - 19560207
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGTGAATAATT
Flanking Amino Acid:
GEVKIMIKSKTMTSKEANQE
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.3
0.64
0.9
71.5
38
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
48
-0
2.2
73.95
43

Associated Gene:

Gene:
PRKAR2A
Ensembl Gene ID:
ENSAPLG00000006277
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032387
19558652 - 19611555
52904