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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19568914_19573727_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19568914 - 19573727
Intron Length:
4814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTGTTTTATA
Flanking Amino Acid:
DILLFRNLDQEQLSQVLDAM
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.3
31.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.9
0.72
0.8
76.5
37.7
Minor 5ss
38.3
-1.3
3
49.1
46.6
Minor BPS
50.5
0.01
2
67.32
39.4

Associated Gene:

Gene:
PRKAR2A
Ensembl Gene ID:
ENSAPLG00000006277
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032387
19558652 - 19611555
52904
ENSAPLT00000006536
19558679 - 19611555
52877