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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19573812_19575226_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19573812 - 19575226
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACTT
Flanking Amino Acid:
DEEEEDTEQRVVHPKTDEQR
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.5
0.84
0.9
90.6
22.1
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
PRKAR2A
Ensembl Gene ID:
ENSAPLG00000006277
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006536
19558679 - 19611555
52877