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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19573886_19611353_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19573886 - 19611353
Intron Length:
37468

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTCATTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTACTTTAAAA
Flanking Amino Acid:
DGEPMQTESNVKVQFVIVFL
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.3
69.4
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
77.8
0.62
1
79.1
32.8
Minor 5ss
17.3
-3.8
3.5
25.7
36.9
Minor BPS
68.1
0.56
1.4
74.46
36.5

Associated Gene:

Gene:
PRKAR2A
Ensembl Gene ID:
ENSAPLG00000006277
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032387
19558652 - 19611555
52904