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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19575280_19611251_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19575280 - 19611251
Intron Length:
35972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACCGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTTCTATA
Flanking Amino Acid:
VSPSFSLPVSVCAEAFDPDE
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.35
1.3
52.7
45
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
91.7
0.94
0.5
88.6
21.1
Minor 5ss
42.7
-0.8
3.3
59.1
45.8
Minor BPS
52.3
0.07
1.8
70.33
36

Associated Gene:

Gene:
PRKAR2A
Ensembl Gene ID:
ENSAPLG00000006277
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006536
19558679 - 19611555
52877