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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19635357_19635875_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19635357 - 19635875
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTCCCACC
Flanking Amino Acid:
LKNILTPEGKSVSDLSAPRI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.7
0.4
0.9
60.7
34.6
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
45.1
-0.4
2.2
64.86
40.6

Associated Gene:

Gene:
SLC25A20
Ensembl Gene ID:
ENSAPLG00000029472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031111
19633292 - 19643284
9993