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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19637218_19642508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19637218 - 19642508
Intron Length:
5291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGCAA
5'SS Class:
major
3'SS Sequence:
TTTAATCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTCACTTTAATC
Flanking Amino Acid:
DCFRKTLVGEIQAATGETKY
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
56.9
43.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.7
0.71
0.8
78.3
35.8
Minor 5ss
34.5
-1.8
3.5
47.1
48.3
Minor BPS
66
0.48
1.3
67.47
38.5

Associated Gene:

Gene:
SLC25A20
Ensembl Gene ID:
ENSAPLG00000029472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031111
19633292 - 19643284
9993