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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19642602_19643179_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19642602 - 19643179
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
CACTCAATAAAC
Flanking Amino Acid:
FVGHPLDTIKVRLQTQPKPQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
68.1
0.41
0.9
60.9
35.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46
-0.3
2
55.21
42.2

Associated Gene:

Gene:
SLC25A20
Ensembl Gene ID:
ENSAPLG00000029472
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031111
19633292 - 19643284
9993