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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19644139_19646827_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
19644139 - 19646827
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TCTTAGGCAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
76.2
0.59
0.7
74.5
23.8
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
40.4
-0.7
2.7
60.21
45.6

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996