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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19662938_19663657_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19662938 - 19663657
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CTGTGCTGAAAC
Flanking Amino Acid:
TVLVKDGVGVGVSCMAQDCL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
77.3
0.61
0.9
69
41.3
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
48.4
-0.1
2
60.29
44.6

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996