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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19663780_19664440_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19663780 - 19664440
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTCT
5'SS Class:
major
3'SS Sequence:
GATATGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTGATCTTATCA
Flanking Amino Acid:
RRYLFRDYVESHYQLQLCPG
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.7
0.42
1
60.8
44.4
Minor 5ss
45.5
-0.5
3.1
65.8
45.4
Minor BPS
54.7
0.15
1.7
63.18
43.4

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996