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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19665724_19667141_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19665724 - 19667141
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
TCTGTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTGGGGCTAACA
Flanking Amino Acid:
ANYISAHTKDCPKCNICIEK
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
60
44.5
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
80.3
0.68
0.8
72.9
37.4
Minor 5ss
33.5
-1.9
3.3
44.6
43
Minor BPS
41.4
-0.6
2.6
59.33
46.5

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996