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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19667310_19668812_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19667310 - 19668812
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGGTTTTTCACT
Flanking Amino Acid:
NHMQCSKCKHDFCWMCLGDW
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.3
0.79
0.8
80.7
31.4
Minor 5ss
35.6
-1.6
2.7
43.2
43.8
Minor BPS
53.5
0.19
1.8
68.48
42.8

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996