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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19670175_19670525_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19670175 - 19670525
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CGGCCCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTTT
U12 Branch Point Sequence:
CGGCCCCCCACA
Flanking Amino Acid:
LQNAAKLLAKCRYTLQYTYP
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
61.9
0.27
0.9
53.4
31.1
Minor 5ss
28.3
-2.5
2.8
32.9
42.1
Minor BPS
39.8
-0.8
2.1
46.65
42.6

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996