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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19670595_19671360_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19670595 - 19671360
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTGTCTCTAATT
Flanking Amino Acid:
YMESGPRKKLFEYQQAQLEA
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
61.3
0.43
1.7
75.95
41.6

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996