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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19671445_19671923_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19671445 - 19671923
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
VERADSYDRGDLENQMHIAE
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
ARIH2
Ensembl Gene ID:
ENSAPLG00000006502
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006779
19644027 - 19672022
27996