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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19674246_19674329_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19674246 - 19674329
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAT
U12 Branch Point Sequence:
CTCTCCTCACAG
Flanking Amino Acid:
RALPRLEGIKVGHTQRVELV
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
73
38
Major BPS
67.4
0.43
1.2
69
38.9
Major PPT
75.1
0.57
0.8
68.2
32.1
Minor 5ss
20.7
-3.4
3.8
30.2
43
Minor BPS
46.5
-0.4
2
52.48
47.8

Associated Gene:

Gene:
P4HTM
Ensembl Gene ID:
ENSAPLG00000006841
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048095
19673882 - 19689033
15152