Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19674412_19682776_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19674412 - 19682776

Intron Length:

8365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

AGTTCCTCAGTC

Flanking Amino Acid:

RTLSLKPLLFEIPDFLTEEE

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

83.5

0.75

0.8

77.8

30.2

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

0.14

1.8

66.26

39.3

Associated Gene:

Gene:

P4HTM

Ensembl Gene ID:

ENSAPLG00000006841

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048095

19673882 - 19689033

15152

ENSAPLT00000007092

19673882 - 19689033

15152