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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19678164_19679015_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19678164 - 19679015
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTGAACAGAACT
Flanking Amino Acid:
ILENLCANDFAVKIRILRKN
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
83
0.74
0.7
74.2
30.9
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
45.9
-0.2
1.9
65.19
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006785
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007046
19677829 - 19685312
7484