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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19679103_19679926_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19679103 - 19679926
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
TCTGTTGCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
GTAACCACATTT
Flanking Amino Acid:
STDESSSSRRMPRASCKDCE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
70.6
39.9
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
70.7
0.47
1
66.4
39.5
Minor 5ss
32.7
-2
3.7
46.6
43.3
Minor BPS
42.9
-0.4
2
60.22
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006785
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007046
19677829 - 19685312
7484