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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19683495_19684315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19683495 - 19684315
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTACCT
Flanking Amino Acid:
TAVKADPDGNGVLSLEEFKQ
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.6
0.64
0.8
72.8
32.1
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
61.1
0.43
1.9
82.01
39.1

Associated Gene:

Gene:
P4HTM
Ensembl Gene ID:
ENSAPLG00000006841
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048095
19673882 - 19689033
15152
ENSAPLT00000007092
19673882 - 19689033
15152