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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19686267_19686736_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19686267 - 19686736
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGTCCCCTGACA
Flanking Amino Acid:
NESAPFETSCRYVTVLFYLN
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
79.3
0.66
0.8
72
32.7
Minor 5ss
37.2
-1.5
3.6
57.4
46.8
Minor BPS
62.2
0.38
1.7
74.31
36.4

Associated Gene:

Gene:
P4HTM
Ensembl Gene ID:
ENSAPLG00000006841
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007092
19673882 - 19689033
15152
ENSAPLT00000048095
19673882 - 19689033
15152