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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19692503_19692624_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19692503 - 19692624
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCATCCTAACA
Flanking Amino Acid:
QHAEGEMQPLALGTPLLTVM
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.6
0.73
0.7
75.5
32.9
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
54.1
0.12
1.7
64.1
42.3

Associated Gene:

Gene:
WDR6
Ensembl Gene ID:
ENSAPLG00000025697
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038328
19689283 - 19693103
3821