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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19694111_19694292_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19694111 - 19694292
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CCCCCTGTCACT
Flanking Amino Acid:
SYYNRVHILGEPFPHLFDQM
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
42.3
-0.5
2.3
55.9
46.9

Associated Gene:

Gene:
DALRD3
Ensembl Gene ID:
ENSAPLG00000006918
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007192
19693991 - 19698073
4083