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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19695006_19695326_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19695006 - 19695326
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
CCTGGACCTGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
TCACCCTGGACC
Flanking Amino Acid:
ELLSTAHRSQASSISTKGTK
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
48.1
-0.1
1.7
50.8
38.4
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
58.3
0.24
1.5
65.15
40.3

Associated Gene:

Gene:
DALRD3
Ensembl Gene ID:
ENSAPLG00000006918
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007192
19693991 - 19698073
4083