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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19697322_19697408_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19697322 - 19697408
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGTTGCTCACCC
Flanking Amino Acid:
DHLAQLLRAQGVGIHLVPAV
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
69.4
0.44
0.9
62.6
33.5
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
48.7
-0.1
2.2
67.35
44.1

Associated Gene:

Gene:
DALRD3
Ensembl Gene ID:
ENSAPLG00000006918
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007192
19693991 - 19698073
4083