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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19704634_19704965_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19704634 - 19704965
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
TGGCACCTGACT
Flanking Amino Acid:
DIGAKSLTQVRAMMYSGELK
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
60.1
0.25
1
51
35.6
Major PPT
76.3
0.59
0.8
73.2
31.7
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
48.2
-0
1.9
67.81
42.4

Associated Gene:

Gene:
IMPDH2
Ensembl Gene ID:
ENSAPLG00000006986
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007288
19704413 - 19715913
11501