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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19705339_19705501_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19705339 - 19705501
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
ATCCCTTGCACT
Flanking Amino Acid:
AKALALGASTVMMGSLLAAT
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
64.6
0.33
0.9
58.6
37.1
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
48.5
-0
1.9
68.49
42.4

Associated Gene:

Gene:
IMPDH2
Ensembl Gene ID:
ENSAPLG00000006986
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007288
19704413 - 19715913
11501