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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19709265_19709901_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19709265 - 19709901
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCATG
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
TCTCTTCCAACC
Flanking Amino Acid:
YPNLQVIGGNVVTAAQAKNL
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
65.4
46
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
71.7
0.49
0.8
64.9
30.8
Minor 5ss
41.7
-0.9
3.2
53.6
44.9
Minor BPS
47
-0.2
1.8
60.18
39.1

Associated Gene:

Gene:
IMPDH2
Ensembl Gene ID:
ENSAPLG00000006986
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007288
19704413 - 19715913
11501