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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19714811_19715190_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19714811 - 19715190
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CACTGCTGAATC
Flanking Amino Acid:
FQANEVRKVKKYEQGFITDP
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.4
-0.1
1.9
55.89
42.9

Associated Gene:

Gene:
IMPDH2
Ensembl Gene ID:
ENSAPLG00000006986
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007288
19704413 - 19715913
11501