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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19715505_19715615_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19715505 - 19715615
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCCACACGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCACAC
U12 Branch Point Sequence:
TGTCCCTCCACA
Flanking Amino Acid:
GYIDFTADQVDLTSALTKRI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
55.2
0.13
1.1
62.9
34.3
Major PPT
60.4
0.24
1
53.2
35.6
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
54
0.12
2
70.34
41.4

Associated Gene:

Gene:
IMPDH2
Ensembl Gene ID:
ENSAPLG00000006986
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007288
19704413 - 19715913
11501