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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1972278_1974137_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1972278 - 1974137
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTAAAACAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATT
Flanking Amino Acid:
DIEGTLFVYKRSASPYHGFT
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
53.6
0.08
1
46.5
39.6
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
76.1
0.9
1.1
87.86
31.1

Associated Gene:

Gene:
DCP1A
Ensembl Gene ID:
ENSAPLG00000014921
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015566
1971236 - 2003138
31903