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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19722826_19723636_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19722826 - 19723636
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CTTCCTCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATTTCTGATCT
Flanking Amino Acid:
IKLYDFYLFKCPQSVKGRND
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.2
0.55
0.8
69.5
30
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
63
0.49
1.7
81.93
39.2

Associated Gene:

Gene:
QRICH1
Ensembl Gene ID:
ENSAPLG00000007130
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007429
19722632 - 19742958
20327