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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19723728_19724444_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19723728 - 19724444
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTCT
5'SS Class:
major
3'SS Sequence:
GGTTGGTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GCGTGTCTGACA
Flanking Amino Acid:
AFGVHQTGQKVTDDMYAEQT
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.9
40.4
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
66.1
0.36
1
58.5
43
Minor 5ss
38
-1.3
3.6
56.7
47.6
Minor BPS
43.8
-0.5
2
51.06
41

Associated Gene:

Gene:
QRICH1
Ensembl Gene ID:
ENSAPLG00000007130
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007429
19722632 - 19742958
20327