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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19725041_19726309_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19725041 - 19726309
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTGATTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GACTTCTGATTC
Flanking Amino Acid:
KDVQPRVSPLGYVLSSHVTE
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.2
0.66
0.9
73.1
37.2
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
47.1
-0.2
1.7
52.61
39

Associated Gene:

Gene:
QRICH1
Ensembl Gene ID:
ENSAPLG00000007130
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007429
19722632 - 19742958
20327