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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19726425_19727125_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19726425 - 19727125
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
GAATCTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTGTATTTGACT
Flanking Amino Acid:
LYYIFLCIQKYLFENGRVDD
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
64
42.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.3
0.53
1
65.5
40.6
Minor 5ss
27.2
-2.6
3.6
37.6
47.2
Minor BPS
63.1
0.49
1.5
76.66
40.1

Associated Gene:

Gene:
QRICH1
Ensembl Gene ID:
ENSAPLG00000007130
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007429
19722632 - 19742958
20327