About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19732492_19738820_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19732492 - 19738820
Intron Length:
6329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TGGCCCCTAACT
Flanking Amino Acid:
IQVQQPQQVQVQVQVQQSPQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
72.6
0.51
1
65
41.2
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
64.1
0.52
1.7
79.53
41.8

Associated Gene:

Gene:
QRICH1
Ensembl Gene ID:
ENSAPLG00000007130
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007429
19722632 - 19742958
20327