About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19739151_19742538_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
19739151 - 19742538
Intron Length:
3388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GAATTTTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
64.1
41.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75
0.56
1
79.3
26.8
Minor 5ss
29.2
-2.4
2.7
30.6
36.2
Minor BPS
45.8
-0.2
1.7
58.32
39

Associated Gene:

Gene:
QRICH1
Ensembl Gene ID:
ENSAPLG00000007130
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007429
19722632 - 19742958
20327