About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19747610_19747733_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19747610 - 19747733
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CGGCCTCGCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGCGGGCTGACT
Flanking Amino Acid:
YVIAVQNVIKNASGRVMELE
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
58.9
0.2
1
49.6
39.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
37.4
-0.9
2.5
56.14
46.3

Associated Gene:

Gene:
QARS1
Ensembl Gene ID:
ENSAPLG00000007248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007573
19746576 - 19754949
8374