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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19747827_19747962_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19747827 - 19747962
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ACCTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CCCCTCTTACAG
Flanking Amino Acid:
VYIEETDFREELDKGYKRLA
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
69.2
0.48
1
61
37.1
Major PPT
76.1
0.59
0.9
69.1
36.4
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
44
-0.5
1.7
40.72
43.8

Associated Gene:

Gene:
QARS1
Ensembl Gene ID:
ENSAPLG00000007248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007573
19746576 - 19754949
8374