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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19748068_19748140_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19748068 - 19748140
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGGGTTTTCACC
Flanking Amino Acid:
VTITNFPAPETIDVLVPDFP
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
80.9
28.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.4
0.62
0.7
69.1
31.5
Minor 5ss
34.9
-1.7
3.4
46.2
49.1
Minor BPS
48.1
-0.1
1.8
57.6
41.9

Associated Gene:

Gene:
QARS1
Ensembl Gene ID:
ENSAPLG00000007248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007573
19746576 - 19754949
8374