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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19749631_19749707_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19749631 - 19749707
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CCCACGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGTCCCCACGT
Flanking Amino Acid:
AINFNFGYAKANGGVCFLRY
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
63.1
0.3
0.9
52.8
36.6
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
41.3
-0.5
2.3
60.38
48.8

Associated Gene:

Gene:
QARS1
Ensembl Gene ID:
ENSAPLG00000007248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007573
19746576 - 19754949
8374