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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19750185_19750376_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19750185 - 19750376
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
TCTGTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAG
U12 Branch Point Sequence:
AGCGGCTCAGCC
Flanking Amino Acid:
EKQKAPVVENGEVSTEAKSL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
43.7
-0.3
1.5
49.6
40.9
Major PPT
83.2
0.75
0.8
77.1
31.6
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
40
-0.7
2.1
45.52
43

Associated Gene:

Gene:
QARS1
Ensembl Gene ID:
ENSAPLG00000007248
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007573
19746576 - 19754949
8374