Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19750705_19750831_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19750705 - 19750831

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

TTTTTTTTCCCA

Flanking Amino Acid:

KSIKNEVDLQVLHLLGPKTE

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

58.6

0.22

1.5

38.9

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

44.3

-0.4

3.6

73.92

38.7

Associated Gene:

Gene:

QARS1

Ensembl Gene ID:

ENSAPLG00000007248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007573

19746576 - 19754949

8374