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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19758663_19758874_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19758663 - 19758874
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCGACCCCATCC
Flanking Amino Acid:
LLRCKGSLRERWQLLTTPIW
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
68
0.4
0.8
61
29.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
39.5
-0.8
2
43.79
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030026
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046576
19758102 - 19762590
4489