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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19759813_19759886_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19759813 - 19759886
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCGG
5'SS Class:
major
3'SS Sequence:
CCGTGTGCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCCCGCTGAGCC
Flanking Amino Acid:
MLLVLGLDSQFVGVEGFITG
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.4
48.8
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
63.8
0.31
1
56.9
38.7
Minor 5ss
29.1
-2.4
3.4
38.7
46.4
Minor BPS
40.7
-0.7
2
44.11
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030026
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046576
19758102 - 19762590
4489